ENSGALG00000004848


Gallus gallus

Features
Gene ID: ENSGALG00000004848
  
Biological name :YBX1
  
Synonyms : nuclease-sensitive element-binding protein 1 / YBX1
  
Possible biological names infered from orthology : P62960 / P67809 / Y-box binding protein 1 / Y box protein 1
  
Species: Gallus gallus
  
Chr. number: 21
Strand: -1
Band:
Gene start: 6406970
Gene end: 6414976
  
Corresponding Affymetrix probe sets: Gga.4145.1.S1_a_at (Chicken Array)   Gga.4145.3.S1_at (Chicken Array)   GgaAffx.21460.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053697
Ensembl peptide - ENSGALP00000064595
Ensembl peptide - ENSGALP00000062019
Ensembl peptide - ENSGALP00000060513
Ensembl peptide - ENSGALP00000060280
Ensembl peptide - ENSGALP00000058622
Ensembl peptide - ENSGALP00000054264
Ensembl peptide - ENSGALP00000007728
Ensembl peptide - ENSGALP00000038408
NCBI entrez gene - 386575     See in Manteia.
RefSeq - NM_204414
RefSeq - XM_015296809
RefSeq - XM_015296810
RefSeq - XM_015296811
RefSeq Peptide - NP_989745
swissprot - A0A1D5PLI0
swissprot - A0A1L1S0D1
swissprot - F1NKY2
swissprot - F1NFC0
swissprot - A0A1L1RT77
swissprot - A0A1L1RNC5
swissprot - A0A1L1RIP6
swissprot - A0A1D5PN25
Ensembl - ENSGALG00000004848
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ybx1ENSDARG00000004757Danio rerio
 YBX1ENSG00000065978Homo sapiens
 Ybx1ENSMUSG00000028639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
YBX3 / Y-box binding protein 3 / P16989* / Q9JKB3* / Y box protein 3*ENSGALG0000003189051


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051154 negative regulation of striated muscle cell differentiation IEA
 biological_processGO:0070934 CRD-mediated mRNA stabilization IEA
 biological_processGO:1903608 protein localization to cytoplasmic stress granule IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex IEA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0051020 GTPase binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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