ENSGALG00000031890


Gallus gallus

Features
Gene ID: ENSGALG00000031890
  
Biological name :YBX3
  
Synonyms : Y-box binding protein 3 / YBX3
  
Possible biological names infered from orthology : P16989 / Q9JKB3 / Y box protein 3
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 78318610
Gene end: 78343166
  
Corresponding Affymetrix probe sets: Gga.3671.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044719
Ensembl peptide - ENSGALP00000062766
Ensembl peptide - ENSGALP00000062478
Ensembl peptide - ENSGALP00000046705
NCBI entrez gene - 396371     See in Manteia.
RefSeq - NM_205406
RefSeq Peptide - NP_990737
swissprot - A0A1L1RVB1
swissprot - A0A1L1RUH4
swissprot - A0A1D5P211
swissprot - A0A1D5NWH9
Ensembl - ENSGALG00000031890
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 YBX3ENSG00000060138Homo sapiens
 Ybx3ENSMUSG00000030189Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
YBX1 / nuclease-sensitive element-binding protein 1 / P67809* / P62960* / Y box protein 1* / Y-box binding protein 1*ENSGALG0000000484857


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0009566 fertilization IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0046622 positive regulation of organ growth IEA
 biological_processGO:0048642 negative regulation of skeletal muscle tissue development IEA
 biological_processGO:0060546 negative regulation of necroptotic process IEA
 biological_processGO:0071356 cellular response to tumor necrosis factor IEA
 biological_processGO:0071474 cellular hyperosmotic response IEA
 biological_processGO:1902219 negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005844 polysome IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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