ENSDARG00000004954


Danio rerio

Features
Gene ID: ENSDARG00000004954
  
Biological name :grna
  
Synonyms : granulin a / grna
  
Possible biological names infered from orthology : granulin / granulin precursor / GRN / P28799
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 29914427
Gene end: 29941357
  
Corresponding Affymetrix probe sets: Dr.5809.1.A1_at (Zebrafish Array)   NM_001001949_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125945
Ensembl peptide - ENSDARP00000126334
Ensembl peptide - ENSDARP00000125978
Ensembl peptide - ENSDARP00000094299
Ensembl peptide - ENSDARP00000113859
Ensembl peptide - ENSDARP00000123399
Ensembl peptide - ENSDARP00000125830
NCBI entrez gene - 791524     See in Manteia.
RefSeq - NM_001001949
RefSeq - XM_005163969
RefSeq Peptide - NP_001001949
swissprot - I3ISF3
swissprot - I3ISQ5
swissprot - I3IST4
swissprot - I3ITR0
swissprot - E9QI45
swissprot - E9QCA6
swissprot - F1QNY0
ZFIN ID - ZDB-GENE-030131-8434
Ensembl - ENSDARG00000004954
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GRNENSGALG00000033530Gallus gallus
 GRNENSG00000030582Homo sapiens
 GrnENSMUSG00000034708Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
grnb / granulin bENSDARG0000002508128
grn2 / granulin 2ENSDARG000000886414
grn1 / granulin 1ENSDARG000000893624


Protein motifs (from Interpro)
Interpro ID Name
 IPR000118  Granulin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0048675 axon extension IMP
 biological_processGO:0071340 skeletal muscle acetylcholine-gated channel clustering IMP
 cellular_componentGO:0005886 plasma membrane IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000075 spinal cord spinal cord decreased length , abnormal
Show

 ZFA:0000123 liver liver decreased size , abnormal
Show

 ZFA:0001056 myotome myotome acetylcholine-gated channel complex mislocalised , abnormal
myotome acetylcholine-gated channel complex disorganized , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas decreased size , abnormal
Show

 ZFA:0001462 somite border somite border shape , abnormal
Show

 ZFA:0009052 motor neuron motor neuron axon decreased length , abnormal
Show

 ZFA:0009111 hepatocyte hepatocyte apoptotic , abnormal
hepatocyte decreased amount , abnormal
hepatocyte decreased area , abnormal
Show

 ZFA:0009243 CaP motoneuron CaP motoneuron axon decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr