ENSG00000030582


Homo sapiens

Features
Gene ID: ENSG00000030582
  
Biological name :GRN
  
Synonyms : granulin precursor / GRN / P28799
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q21.31
Gene start: 44345086
Gene end: 44353102
  
Corresponding Affymetrix probe sets: 200678_x_at (Human Genome U133 Plus 2.0 Array)   211284_s_at (Human Genome U133 Plus 2.0 Array)   216041_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000492014
Ensembl peptide - ENSP00000467870
Ensembl peptide - ENSP00000468318
Ensembl peptide - ENSP00000053867
Ensembl peptide - ENSP00000465375
Ensembl peptide - ENSP00000465518
Ensembl peptide - ENSP00000465673
Ensembl peptide - ENSP00000466271
Ensembl peptide - ENSP00000466405
Ensembl peptide - ENSP00000466611
Ensembl peptide - ENSP00000466956
Ensembl peptide - ENSP00000467022
Ensembl peptide - ENSP00000467431
Ensembl peptide - ENSP00000467616
Ensembl peptide - ENSP00000467745
Ensembl peptide - ENSP00000467837
NCBI entrez gene - 2896     See in Manteia.
OMIM - 138945
RefSeq - XM_005257253
RefSeq - NM_002087
RefSeq Peptide - NP_002078
swissprot - K7ELY1
swissprot - K7EM89
swissprot - K7EMR1
swissprot - K7ENI2
swissprot - K7ENN1
swissprot - K7EPL0
swissprot - K7EQ05
swissprot - K7EQA7
swissprot - K7EQI0
swissprot - K7EQK6
swissprot - K7ERM2
swissprot - K7EJY4
swissprot - P28799
swissprot - K7EKL3
swissprot - K7EK92
Ensembl - ENSG00000030582
  
Related genetic diseases (OMIM): 607485 - Aphasia, primary progressive, 607485
  614706 - Ceroid lipofuscinosis, neuronal, 11, 614706
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 grnaENSDARG00000004954Danio rerio
 GRNENSGALG00000033530Gallus gallus
 GrnENSMUSG00000034708Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000118  Granulin
 IPR037277  Granulin superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction NAS
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0043312 neutrophil degranulation TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005764 lysosome IDA
 cellular_componentGO:0005768 endosome IDA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0035578 azurophil granule lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005125 cytokine activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity TAS


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000474 Excess nuchal skin 
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 HP:0000505 Impaired vision 
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 HP:0000556 Retinal dystrophy 
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 HP:0000648 Optic atrophy 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000710 Hyperorality 
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 HP:0000711 Restlessness 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000719 Inappropriate behavior 
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 HP:0000723 Restrictive behaviour, interests, and activities 
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 HP:0000726 Dementia 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000734 Disinhibition 
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 HP:0000737 Irritability 
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0000741 Apathy 
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 HP:0000751 Personality changes 
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 HP:0000757 Lack of insight 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001300 Parkinsonism 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002071 Extrapyramidal signs 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002145 Frontotemporal dementia 
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 HP:0002171 Gliosis 
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 HP:0002186 Apraxia "A defect in the understanding of complex motor commands and in the execution of certain learned movements, i.e., deficits in the cognitive components of learned movements." [HPO:curators]
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 HP:0002300 Mutism 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002357 Dysphasia 
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 HP:0002366 Lower motor neuron signs 
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 HP:0002371 Loss of speech 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002381 Aphasia 
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 HP:0002427 Motor aphasia 
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 HP:0002442 Dyscalculia 
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 HP:0002446 Astrocytosis 
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 HP:0002465 Poor speech 
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 HP:0002493 Corticospinal tract dysfunction 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0002591 Polyphagia 
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 HP:0003678 Rapidly progressive 
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 HP:0006892 Cerebral atrophy, frontotemporal, progressive 
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 HP:0006956 Dilation of lateral ventricles 
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 HP:0006977 Grammar-specific speech disorder 
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 HP:0007064 Progressive language deterioration 
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 HP:0007112 Mri shows frontal and temporal cortical atrophy 
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 HP:0008762 Repetitive compulsive behavior 
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 HP:0010522 Dyslexia "A learning disorder characterized primarily by difficulties in learning to read and spell. Dyslectic children also exhibit a tendency to read words from right to left and to confuse letters such as b and d whose orientation is important for their identification. Children with dyslexia appear to be impaired in phonemic skills (the ability to associate visual symbols with the sounds they represent)." [HPO:curators]
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 HP:0010523 Alexia "An acquired type of sensory aphasia where damage to the brain leads to the loss of the ability to read." [HPO:curators]
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 HP:0010526 Dysgraphia "A writing disability in the absence of motor or sensory deficits of the upper extremities, resulting in an impairment in the ability to write regardless of the ability to read and not due to intellectual impairment." [HPO:curators]
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 HP:0010529 Echolalia "The tendency to repeat vocalizations made by another person." [HPO:curators]
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 HP:0011204 EEG with continuous slow activity "EEG showing diffuse slowing without interruption." [HPO:jalbers]
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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 HP:0012658 Abnormal brain FDG positron emission tomography "An anomaly detectable in [18F]-fluorodeoxyglucose (FDG) positron emission tomography (PET) brain scans. Glucose uptake measured with FDG-PET is a marker of neuronal metabolic activity." [HPO:probinson]
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 HP:0012671 Abulia "Poverty of behavior and speech output, lack of initiative, loss of emotional responses, psychomotor slowing, and prolonged speech latency." [HPO:probinson, pmid:16030444, UToronto:HTrang]
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 HP:0030212 Collectionism "Excessive or pathological tendency to save and collect possessions." []
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 HP:0030213 Emotional blunting "Lack of emotional reactivity and empathy for situations or persons, sometime also for family members." [ICM:PCaroppo]
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 HP:0030214 Hypersexuality "Pathological persistent sexual disinhibiting behavior, directed at oneself or to others." [ICM:PCaroppo]
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 HP:0030222 Visual agnosia "Difficulty in recognizing objects by visual input in absence of sensorial visual impairment." [ICM:PCaroppo]
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 HP:0030223 Perseveration "Perseveration can be defined as the contextually inappropriate and unintentional repetition of a response or behavioral unit. In other words, the observed repetitiveness does not meet the demands of the situation, is not the product of deliberation, and may even unfold despite counterintention. Perseveration can therefore be differentiated from goal-directed and intentional forms of repetition, such as linguistic redundancies designed to enhance communicative or poetic impact." [HPO:probinson, pmid:9050113]
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 HP:0030391 Spoken Word Recognition Deficit "Reduced ability of lexical discrimination, which refers to the process of distinguishing a stimulus word from other phonologically similar words. Lexical discrimination can be defined as the process of correctly identifying words in the mental lexicon to match the phonological input of a stimulus." [HPO:probinson]
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 HP:0030784 Anomia "An inability to name people and objects that are correctly perceived. The individual is able to describe the object in question, but cannot provide the name." [] {comment="HPO:probinson"}
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 HP:0100256 Senile plaques "Senile plaques are extracellular deposits of amyloid in the gray matter of the brain." [HPO:sdoelken]
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 HP:0500014 Abnormal test result "Abnormal finding in a diagnostic test or assay." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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