ENSDARG00000005359


Danio rerio

Features
Gene ID: ENSDARG00000005359
  
Biological name :sucla2
  
Synonyms : succinate-CoA ligase, ADP-forming, beta subunit / sucla2
  
Possible biological names infered from orthology : Q9P2R7 / Q9Z2I9 / Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 10037252
Gene end: 10056640
  
Corresponding Affymetrix probe sets: Dr.4777.1.S1_at (Zebrafish Array)   Dr.4777.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000021652
Ensembl peptide - ENSDARP00000123749
NCBI entrez gene - 406299     See in Manteia.
RefSeq - NM_213026
RefSeq Peptide - NP_998191
swissprot - F8W590
swissprot - Q6PBI0
ZFIN ID - ZDB-GENE-040426-1963
Ensembl - ENSDARG00000005359
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SUCLA2ENSGALG00000016993Gallus gallus
 Q9P2R7ENSG00000136143Homo sapiens
 Q9Z2I9ENSMUSG00000022110Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
suclg2 / succinate-CoA ligase, GDP-forming, beta subunit / Q96I99* / Q9Z2I8* / Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial *ENSDARG0000004491446


Protein motifs (from Interpro)
Interpro ID Name
 IPR005809  Succinate--CoA synthetase, beta subunit
 IPR005811  ATP-citrate lyase/succinyl-CoA ligase
 IPR013650  ATP-grasp fold, succinyl-CoA synthetase-type
 IPR013815  ATP-grasp fold, subdomain 1
 IPR016102  Succinyl-CoA synthetase-like
 IPR017866  Succinyl-CoA synthetase, beta subunit, conserved site
 IPR034723  Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006099 tricarboxylic acid cycle IEA
 biological_processGO:0008152 metabolic process IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004775 succinate-CoA ligase (ADP-forming) activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000052712 suclg1 / succinate-CoA ligase, alpha subunit / P53597* / Q9WUM5* / Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial *  / complex






 

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