ENSG00000136143


Homo sapiens

Features
Gene ID: ENSG00000136143
  
Biological name :SUCLA2
  
Synonyms : Q9P2R7 / succinate-CoA ligase ADP-forming beta subunit / SUCLA2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: -1
Band: q14.2
Gene start: 47745736
Gene end: 48037968
  
Corresponding Affymetrix probe sets: 202930_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494607
Ensembl peptide - ENSP00000494723
Ensembl peptide - ENSP00000496235
Ensembl peptide - ENSP00000495674
Ensembl peptide - ENSP00000495664
Ensembl peptide - ENSP00000495250
Ensembl peptide - ENSP00000494987
Ensembl peptide - ENSP00000367923
Ensembl peptide - ENSP00000392771
Ensembl peptide - ENSP00000415091
Ensembl peptide - ENSP00000488974
Ensembl peptide - ENSP00000489055
Ensembl peptide - ENSP00000489175
Ensembl peptide - ENSP00000489542
Ensembl peptide - ENSP00000493977
Ensembl peptide - ENSP00000494360
NCBI entrez gene - 8803     See in Manteia.
OMIM - 603921
RefSeq - NM_003850
RefSeq - XM_017020806
RefSeq - XM_017020807
RefSeq - XM_017020808
RefSeq - XM_017020809
RefSeq Peptide - NP_003841
swissprot - Q5T9Q8
swissprot - Q9P2R7
swissprot - Q5T9Q5
swissprot - A0A0U1RRI1
swissprot - A0A0U1RQU7
swissprot - A0A0U1RQL1
swissprot - A0A0U1RQF8
swissprot - E5KS60
Ensembl - ENSG00000136143
  
Related genetic diseases (OMIM): 612073 - Mitochondrial DNA depletion syndrome 5 (encephalomyopathic with or without methylmalonic aciduria), 612073
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sucla2ENSDARG00000005359Danio rerio
 SUCLA2ENSGALG00000016993Gallus gallus
 Q9Z2I9ENSMUSG00000022110Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96I99 / SUCLG2 / succinate-CoA ligase GDP-forming beta subunitENSG0000017234045


Protein motifs (from Interpro)
Interpro ID Name
 IPR005809  Succinate--CoA synthetase, beta subunit
 IPR005811  ATP-citrate lyase/succinyl-CoA ligase
 IPR011761  ATP-grasp fold
 IPR013650  ATP-grasp fold, succinyl-CoA synthetase-type
 IPR013815  ATP-grasp fold, subdomain 1
 IPR016102  Succinyl-CoA synthetase-like
 IPR017866  Succinyl-CoA synthetase, beta subunit, conserved site
 IPR034723  Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006099 tricarboxylic acid cycle IEA
 biological_processGO:0006104 succinyl-CoA metabolic process TAS
 biological_processGO:0006105 succinate metabolic process IEA
 biological_processGO:0006781 succinyl-CoA pathway NAS
 biological_processGO:0008152 metabolic process IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004775 succinate-CoA ligase (ADP-forming) activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000649 Abnormality of vision evoked potentials 
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000737 Irritability 
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001349 Facial diplegia "Facial diplegia refers to simultaneous facial palsy (bilateral facial palsy is much rarer than unilateral facial palsy)." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0002059 Cerebral atrophy 
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 HP:0002119 Ventriculomegaly 
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 HP:0002134 Abnormality of the basal ganglia "Abnormality of the basal ganglia, which are a group of nuclei (striatum, pallidum substantia nigra, and the subthalamic nucleus) at the base of the forebrain that are connected to the cerebral cortex, the thalamus, and other areas. The basal ganglia subserve motor functions that are distinct from those of the pyramidal (corticospinal) tract, for which reason neurologic abnormalities caused by lesions to the basal ganglia are often referred to as extrapyramidal." [HPO:curators]
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 HP:0002194 Delayed gross motor development 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002305 Athetosis "Athetosis (from the Greek word for changeable or unfixed ) refers to an inability to sustain the muscles of the fingers, toes, tongue, or any other group of muscles in a fixed position. Instead, posture is interrupted by slow, purposeless involuntary movements." [HPO:curators]
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 HP:0002448 Encephalopathy, progressive 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002912 Methylmalonic acidemia 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003593 Early onset 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004326 Cachexia 
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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 HP:0008945 Loss of ability to walk in early childhood 
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 HP:0008972 Decreased activities of mitochondrial-encoded respiratory chain complexes 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0012120 Methylmalonic aciduria "Increased concentration of `methylmalonic acid` (CHEBI:30860) in the urine." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000163541 P53597 / SUCLG1 / succinate-CoA ligase alpha subunit  / complex






 

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