ENSDARG00000005945


Danio rerio

Features
Gene ID: ENSDARG00000005945
  
Biological name :sart1
  
Synonyms : sart1 / SART1, U4/U6.U5 tri-snRNP-associated protein 1
  
Possible biological names infered from orthology : O43290 / Q9Z315 / U4/U6.U5 tri-snRNP-associated protein 1
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 27302752
Gene end: 27324771
  
Corresponding Affymetrix probe sets: Dr.1088.1.A1_at (Zebrafish Array)   NM_001002673_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000002453
NCBI entrez gene - 436946     See in Manteia.
RefSeq - NM_001002673
RefSeq Peptide - NP_001002673
swissprot - Q6DG11
ZFIN ID - ZDB-GENE-040718-422
Ensembl - ENSDARG00000005945
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SART1ENSG00000175467Homo sapiens
 Sart1ENSMUSG00000039148Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005011  SNU66/SART1 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000481 maturation of 5S rRNA IBA
 biological_processGO:0045292 mRNA cis splicing, via spliceosome IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr