ENSDARG00000005980


Danio rerio

Features
Gene ID: ENSDARG00000005980
  
Biological name :sfswap
  
Synonyms : sfswap / splicing factor SWAP
  
Possible biological names infered from orthology : Q12872 / Q3USH5 / Splicing factor, suppressor of white-apricot homolog
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 15125497
Gene end: 15282452
  
Corresponding Affymetrix probe sets: Dr.15152.1.S1_at (Zebrafish Array)   NM_201168_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000121684
Ensembl peptide - ENSDARP00000115086
NCBI entrez gene - 394143     See in Manteia.
RefSeq - NM_201168
RefSeq Peptide - NP_957462
swissprot - F1Q7E8
swissprot - F1Q5L3
ZFIN ID - ZDB-GENE-040426-931
Ensembl - ENSDARG00000005980
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SFSWAPENSGALG00000002487Gallus gallus
 Q12872ENSG00000061936Homo sapiens
 Q3USH5ENSMUSG00000029439Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000061  SWAP/Surp
 IPR019147  Suppressor of white apricot N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000395 mRNA 5"-splice site recognition IBA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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