ENSMUSG00000029439


Mus musculus

Features
Gene ID: ENSMUSG00000029439
  
Biological name :Sfswap
  
Synonyms : Q3USH5 / Sfswap / Splicing factor, suppressor of white-apricot homolog
  
Possible biological names infered from orthology : Q12872 / splicing factor SWAP
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: G1.3
Gene start: 129501221
Gene end: 129571384
  
Corresponding Affymetrix probe sets: 10526014 (MoGene1.0st)   1424997_at (Mouse Genome 430 2.0 Array)   1433677_at (Mouse Genome 430 2.0 Array)   1434966_at (Mouse Genome 430 2.0 Array)   1438674_a_at (Mouse Genome 430 2.0 Array)   1438675_at (Mouse Genome 430 2.0 Array)   1454683_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000143351
Ensembl peptide - ENSMUSP00000143640
Ensembl peptide - ENSMUSP00000062413
Ensembl peptide - ENSMUSP00000142464
NCBI entrez gene - 231769     See in Manteia.
MGI - MGI:101760
RefSeq - XM_017320872
RefSeq - XM_006504303
RefSeq - XM_006504304
RefSeq - XM_006504305
RefSeq - XM_011240840
RefSeq - XM_011240841
RefSeq - NM_172276
RefSeq - XM_006504300
RefSeq - XM_006504301
RefSeq - XM_006504302
RefSeq Peptide - NP_758480
swissprot - A0A0G2JGP0
swissprot - A0A0G2JFY2
swissprot - A0A0G2JDQ9
swissprot - Q3USH5
Ensembl - ENSMUSG00000029439
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sfswapENSDARG00000005980Danio rerio
 SFSWAPENSGALG00000002487Gallus gallus
 Q12872ENSG00000061936Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000061  SWAP/Surp
 IPR019147  Suppressor of white apricot N-terminal domain
 IPR035967  SWAP/Surp superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IDA
 biological_processGO:0000395 mRNA 5"-splice site recognition IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome ISS
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000026 abnormal inner ear morphology "malformation or malfunction of any components of the labyrinth, including the semicircular canals, vestibule and cochlea" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:1776]
Show

Allelic Composition: Hsp90aa1Tg(Tyr)2396BOve/Hsp90aa1Tg(Tyr)2396BOve
Genetic Background: FVB/N-Hsp90aa1Tg(Tyr)2396BOve

 MP:0003491 abnormal voluntary movement "anomalies in coordinated movements executed with a purpose and can be improved by learning and/or experience" [Nmice:Neuromice Consortium Submission]
Show

Allelic Composition: Hsp90aa1Tg(Tyr)2396BOve/Hsp90aa1Tg(Tyr)2396BOve
Genetic Background: FVB/N-Hsp90aa1Tg(Tyr)2396BOve

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr