ENSDARG00000006766


Danio rerio

Features
Gene ID: ENSDARG00000006766
  
Biological name :snd1
  
Synonyms : Q7ZT42 / snd1 / staphylococcal nuclease and tudor domain containing 1
  
Possible biological names infered from orthology : Q78PY7 / Q7KZF4 / Staphylococcal nuclease domain-containing protein 1
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 19396945
Gene end: 19694108
  
Corresponding Affymetrix probe sets: Dr.24245.2.S1_a_at (Zebrafish Array)   Dr.24245.3.S1_at (Zebrafish Array)   Dr.24245.3.S1_a_at (Zebrafish Array)   NM_182865_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000040404
Ensembl peptide - ENSDARP00000091746
NCBI entrez gene - 324404     See in Manteia.
RefSeq - NM_001293681
RefSeq - NM_182865
RefSeq Peptide - NP_001280610
RefSeq Peptide - NP_878285
swissprot - Q5RGK8
swissprot - Q7ZT42
ZFIN ID - ZDB-GENE-030131-3124
Ensembl - ENSDARG00000006766
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SND1ENSG00000197157Homo sapiens
 Snd1ENSMUSG00000001424Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002071  Thermonuclease active site
 IPR002999  Tudor domain
 IPR016071  Staphylococcal nuclease (SNase-like), OB-fold
 IPR016685  RNA-induced silencing complex, nuclease component Tudor-SN
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006401 RNA catabolic process IBA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016442 RISC complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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