ENSMUSG00000001424


Mus musculus

Features
Gene ID: ENSMUSG00000001424
  
Biological name :Snd1
  
Synonyms : Q78PY7 / Snd1 / Staphylococcal nuclease domain-containing protein 1
  
Possible biological names infered from orthology : Q7KZF4 / staphylococcal nuclease and tudor domain containing 1
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: A3.3
Gene start: 28475139
Gene end: 28935162
  
Corresponding Affymetrix probe sets: 10536762 (MoGene1.0st)   1416038_at (Mouse Genome 430 2.0 Array)   1437036_at (Mouse Genome 430 2.0 Array)   1437037_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000126382
Ensembl peptide - ENSMUSP00000128737
Ensembl peptide - ENSMUSP00000127317
Ensembl peptide - ENSMUSP00000001460
NCBI entrez gene - 56463     See in Manteia.
MGI - MGI:1929266
RefSeq - NM_019776
RefSeq - XM_006505142
RefSeq Peptide - NP_062750
swissprot - E9Q3E9
swissprot - Q3TJ56
swissprot - Q78PY7
swissprot - A0A1C7ZN09
Ensembl - ENSMUSG00000001424
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snd1ENSDARG00000006766Danio rerio
 SND1ENSG00000197157Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002071  Thermonuclease active site
 IPR002999  Tudor domain
 IPR016071  Staphylococcal nuclease (SNase-like), OB-fold
 IPR016685  RNA-induced silencing complex, nuclease component Tudor-SN
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006401 RNA catabolic process IBA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016442 RISC complex IEA
 cellular_componentGO:0042470 melanosome IEA
 cellular_componentGO:0097433 dense body IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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