ENSDARG00000006818


Danio rerio

Features
Gene ID: ENSDARG00000006818
  
Biological name :urod
  
Synonyms : Q9PTS2 / urod / uroporphyrinogen decarboxylase
  
Possible biological names infered from orthology : P06132 / P70697
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 27556168
Gene end: 27575803
  
Corresponding Affymetrix probe sets: Dr.2166.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000023867
NCBI entrez gene - 30617     See in Manteia.
swissprot - Q9PTS2
ZFIN ID - ZDB-GENE-000208-18
Ensembl - ENSDARG00000006818
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000010219Gallus gallus
 URODENSG00000126088Homo sapiens
 UrodENSMUSG00000028684Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000257  Uroporphyrinogen decarboxylase (URO-D)
 IPR006361  Uroporphyrinogen decarboxylase HemE


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006778 porphyrin-containing compound metabolic process IDA
 biological_processGO:0006779 porphyrin-containing compound biosynthetic process IEA
 biological_processGO:0006782 protoporphyrinogen IX biosynthetic process IEA
 biological_processGO:0006783 heme biosynthetic process IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004853 uroporphyrinogen decarboxylase activity IDA
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0016831 carboxy-lyase activity IEA


Pathways (from Reactome)
Pathway description
Heme biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood quality , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000108 fin fin necrotic , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
whole organism viability , abnormal
whole organism photosensitive , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte fluorescence , abnormal
nucleate erythrocyte autofluorescence , abnormal
nucleate erythrocyte increased fluorescence , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000006818 urod / Q9PTS2 / uroporphyrinogen decarboxylase / P06132* / P70697*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr