ENSDARG00000006939


Danio rerio

Features
Gene ID: ENSDARG00000006939
  
Biological name :tbx6l
  
Synonyms : T-box 6, like / tbx6l
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 42280372
Gene end: 42297333
  
Corresponding Affymetrix probe sets: Dr.224.1.S1_at (Zebrafish Array)   NM_131052_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000113982
NCBI entrez gene - 30254     See in Manteia.
RefSeq - NM_131052
RefSeq - XM_017356035
RefSeq Peptide - NP_571127
swissprot - B0S6U6
ZFIN ID - ZDB-GENE-980526-171
Ensembl - ENSDARG00000006939
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mgaa / MGA, MAX dimerization protein a / MGA* / Q8IWI9* / A2AWL7* / MAX-associated protein * / MGA, MAX dimerization protein*ENSDARG0000007878431
tbx21 / T-box 21 / Q9JKD8* / Q9UL17* / T-box transcription factor TBX21 *ENSDARG0000000447320
eomesa / eomesodermin homolog a / EOMES* / O95936* / eomesodermin*ENSDARG0000000664020
tbr1b / T-box, brain, 1b / TBR1* / Q16650* / T-box, brain 1*ENSDARG0000000471220
tbx19 / T-box 19 / O60806* / Q99ME7* / T-box transcription factor TBX19 *ENSDARG0000007918719
eomesb / eomesodermin homolog b / EOMES* / O95936* / eomesodermin*ENSDARG0000010424319
tbxtb / T-box transcription factor Tb / T* / TBXT* / P20293* / O15178* / T-box transcription factor T* / brachyury, T-box transcription factor T*ENSDARG0000003980619
tbr1a / T-box, brain, 1aENSDARG0000007625919
tbxta / Q07998 / T-box transcription factor TaENSDARG0000010157618


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000077 tail bud tail bud mesodermal cell increased distribution , abnormal
Show

 ZFA:0000155 somite somite increased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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