ENSDARG00000039806


Danio rerio

Features
Gene ID: ENSDARG00000039806
  
Biological name :tbxtb
  
Synonyms : T-box transcription factor Tb / tbxtb
  
Possible biological names infered from orthology : brachyury, T-box transcription factor T / O15178 / P20293 / T / T-box transcription factor T / TBXT
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 4439074
Gene end: 4453663
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000129298
Ensembl peptide - ENSDARP00000150638
NCBI entrez gene - 100004296     See in Manteia.
swissprot - X1WGE3
ZFIN ID - ZDB-GENE-081028-48
Ensembl - ENSDARG00000039806
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TENSGALG00000011489Gallus gallus
 TBXTENSG00000164458Homo sapiens
 TENSMUSG00000062327Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbxta / Q07998 / T-box transcription factor TaENSDARG0000010157660
tbx19 / T-box 19 / O60806* / Q99ME7* / T-box transcription factor TBX19 *ENSDARG0000007918750
eomesa / eomesodermin homolog a / EOMES* / O95936* / eomesodermin*ENSDARG0000000664029
tbr1b / T-box, brain, 1b / TBR1* / Q16650* / T-box, brain 1*ENSDARG0000000471229
mgaa / MGA, MAX dimerization protein a / MGA* / Q8IWI9* / A2AWL7* / MAX-associated protein * / MGA, MAX dimerization protein*ENSDARG0000007878428
tbx21 / T-box 21 / Q9JKD8* / Q9UL17* / T-box transcription factor TBX21 *ENSDARG0000000447328
eomesb / eomesodermin homolog b / EOMES* / O95936* / eomesodermin*ENSDARG0000010424326
tbr1a / T-box, brain, 1aENSDARG0000007625925
tbx6l / T-box 6, likeENSDARG0000000693922


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR002070  Transcription factor, Brachyury
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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