ENSDARG00000007098


Danio rerio

Features
Gene ID: ENSDARG00000007098
  
Biological name :itm2ba
  
Synonyms : integral membrane protein 2Ba / itm2ba
  
Possible biological names infered from orthology : integral membrane protein 2B / Integral membrane protein 2B BRI2, membrane form BRI2 intracellular domain BRI2C, soluble form Bri23 peptide / ITM2B / O89051 / Q9Y287
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 10015525
Gene end: 10026858
  
Corresponding Affymetrix probe sets: Dr.11083.1.S1_at (Zebrafish Array)   Dr.25334.1.A1_at (Zebrafish Array)   NM_199646_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000020118
NCBI entrez gene - 323632     See in Manteia.
RefSeq - NM_199646
RefSeq Peptide - NP_955940
swissprot - Q803H7
ZFIN ID - ZDB-GENE-030131-2352
Ensembl - ENSDARG00000007098
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ITM2BENSGALG00000016996Gallus gallus
 ITM2BENSG00000136156Homo sapiens
 Itm2bENSMUSG00000022108Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
itm2bb / integral membrane protein 2Bb / ITM2B* / O89051* / Q9Y287* / integral membrane protein 2B* / Integral membrane protein 2B BRI2, membrane form BRI2 intracellular domain BRI2C, solub...ENSDARG0000004150559
itm2ca / integral membrane protein 2Ca / ITM2C* / Q91VK4* / Q9NQX7* / integral membrane protein 2C* / Integral membrane protein 2C CT-BRI3*ENSDARG0000004344845
itm2cb / integral membrane protein 2Cb / ITM2C* / Q91VK4* / Q9NQX7* / integral membrane protein 2C* / Integral membrane protein 2C CT-BRI3*ENSDARG0000003965043


Protein motifs (from Interpro)
Interpro ID Name
 IPR007084  BRICHOS domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0042985 negative regulation of amyloid precursor protein biosynthetic process IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome IBA
 molecular_functionGO:0001540 amyloid-beta binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr