ENSDARG00000007413


Danio rerio

Features
Gene ID: ENSDARG00000007413
  
Biological name :arid2
  
Synonyms : arid2 / AT rich interactive domain 2 (ARID, RFX-like)
  
Possible biological names infered from orthology : AT-rich interaction domain 2 / AT-rich interactive domain-containing protein 2 / E9Q7E2 / Q68CP9
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 1647098
Gene end: 1684347
  
Corresponding Affymetrix probe sets: Dr.13870.1.S1_at (Zebrafish Array)   Dr.13870.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000099617
Ensembl peptide - ENSDARP00000011701
NCBI entrez gene - 566352     See in Manteia.
RefSeq - XM_005164457
swissprot - F6NXG0
swissprot - E7F3J3
ZFIN ID - ZDB-GENE-030131-6311
Ensembl - ENSDARG00000007413
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARID2ENSGALG00000033074Gallus gallus
 ARID2ENSG00000189079Homo sapiens
 Arid2ENSMUSG00000033237Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR011989  Armadillo-like helical
 IPR011991  ArsR-like helix-turn-helix domain
 IPR013087  Zinc finger C2H2-type
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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