ENSDARG00000007744


Danio rerio

Features
Gene ID: ENSDARG00000007744
  
Biological name :tsr1
  
Synonyms : tsr1 / TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)
  
Possible biological names infered from orthology : Pre-rRNA-processing / Q2NL82 / Q5SWD9 / TSR1, ribosome maturation factor
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 25635326
Gene end: 25656331
  
Corresponding Affymetrix probe sets: Dr.5371.1.A1_at (Zebrafish Array)   NM_001037370_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116271
Ensembl peptide - ENSDARP00000136648
Ensembl peptide - ENSDARP00000123769
Ensembl peptide - ENSDARP00000052644
NCBI entrez gene - 325037     See in Manteia.
RefSeq - NM_001037370
RefSeq - XM_005157568
RefSeq Peptide - NP_001032447
swissprot - F8W570
swissprot - E7FCX4
swissprot - A0A0R4IKX4
swissprot - F1Q594
ZFIN ID - ZDB-GENE-030131-3762
Ensembl - ENSDARG00000007744
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TSR1ENSG00000167721Homo sapiens
 Tsr1ENSMUSG00000038335Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007034  Ribosome biogenesis protein BMS1/TSR1, C-terminal
 IPR012948  AARP2CN
 IPR030387  Bms1/Tsr1-type G domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0030688 preribosome, small subunit precursor IBA
 molecular_functionGO:0003924 GTPase activity IBA
 molecular_functionGO:0005525 GTP binding IBA
 molecular_functionGO:0034511 U3 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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