ENSG00000167721


Homo sapiens

Features
Gene ID: ENSG00000167721
  
Biological name :TSR1
  
Synonyms : Q2NL82 / TSR1 / TSR1, ribosome maturation factor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: p13.3
Gene start: 2322503
Gene end: 2337507
  
Corresponding Affymetrix probe sets: 218155_x_at (Human Genome U133 Plus 2.0 Array)   218156_s_at (Human Genome U133 Plus 2.0 Array)   221987_s_at (Human Genome U133 Plus 2.0 Array)   239042_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000301364
Ensembl peptide - ENSP00000461192
Ensembl peptide - ENSP00000461498
Ensembl peptide - ENSP00000459012
NCBI entrez gene - 55720     See in Manteia.
OMIM - 611214
RefSeq - NM_018128
RefSeq Peptide - NP_060598
swissprot - Q2NL82
swissprot - I3L1Q5
swissprot - I3L4E8
swissprot - I3L4T0
Ensembl - ENSG00000167721
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsr1ENSDARG00000007744Danio rerio
 Tsr1ENSMUSG00000038335Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007034  Ribosome biogenesis protein BMS1/TSR1, C-terminal
 IPR012948  AARP2CN
 IPR030387  Bms1/Tsr1-type G domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus ISS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0030688 preribosome, small subunit precursor IBA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003924 GTPase activity IBA
 molecular_functionGO:0005525 GTP binding IBA
 molecular_functionGO:0034511 U3 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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