ENSMUSG00000038335


Mus musculus

Features
Gene ID: ENSMUSG00000038335
  
Biological name :Tsr1
  
Synonyms : Pre-rRNA-processing / Q5SWD9 / Tsr1
  
Possible biological names infered from orthology : Q2NL82 / TSR1, ribosome maturation factor
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B5
Gene start: 74898071
Gene end: 74909342
  
Corresponding Affymetrix probe sets: 10378508 (MoGene1.0st)   1433502_s_at (Mouse Genome 430 2.0 Array)   1455643_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000114183
Ensembl peptide - ENSMUSP00000121384
Ensembl peptide - ENSMUSP00000119868
Ensembl peptide - ENSMUSP00000039027
NCBI entrez gene - 104662     See in Manteia.
MGI - MGI:2144566
RefSeq - NM_177325
RefSeq Peptide - NP_796299
swissprot - D6RCZ2
swissprot - F6ZVN6
swissprot - D6RI76
swissprot - Q5SWD9
Ensembl - ENSMUSG00000038335
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsr1ENSDARG00000007744Danio rerio
 TSR1ENSG00000167721Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007034  Ribosome biogenesis protein BMS1/TSR1, C-terminal
 IPR012948  AARP2CN
 IPR030387  Bms1/Tsr1-type G domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus ISS
 cellular_componentGO:0030688 preribosome, small subunit precursor IBA
 molecular_functionGO:0003924 GTPase activity IBA
 molecular_functionGO:0005525 GTP binding IBA
 molecular_functionGO:0034511 U3 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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