ENSDARG00000007982


Danio rerio

Features
Gene ID: ENSDARG00000007982
  
Biological name :onecut1
  
Synonyms : onecut1 / one cut homeobox 1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 38755023
Gene end: 38760271
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000026697
Ensembl peptide - ENSDARP00000150026
NCBI entrez gene - 393545     See in Manteia.
RefSeq - NM_200573
RefSeq Peptide - NP_956867
swissprot - Q6NYT7
swissprot - Q6PHC9
ZFIN ID - ZDB-GENE-040426-1469
Ensembl - ENSDARG00000007982
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
onecut2 / one cut homeobox 2 / O95948* / Q6XBJ3* / One cut domain family member 2 *ENSDARG0000009038765
onecut3b / one cut homeobox 3b / O60422* / ONECUT3* / one cut homeobox 3*ENSDARG0000009105961
onecut3a / one cut homeobox 3a / Q8K557* / O60422* / ONECUT3* / one cut homeobox 3* / One cut domain family member 3 *ENSDARG0000005639561
onecutl / one cut domain, family member, likeENSDARG0000004025346
cux1a / cut-like homeobox 1aENSDARG0000007845923
cux2b / cut-like homeobox 2b / CUX2* / P70298* / O14529* / cut like homeobox 2* / Homeobox protein cut-like 2 *ENSDARG0000008634522
cux1b / cut-like homeobox 1bENSDARG000000431348


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0035622 intrahepatic bile duct development IGI
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000036 liver and biliary system liver and biliary system decreased functionality , abnormal
liver and biliary system morphology , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000123 liver liver decreased functionality , abnormal
Show

 ZFA:0001114 head head increased size , abnormal
Show

 ZFA:0005164 bile ductule bile ductule aplastic , abnormal
bile ductule decreased amount , abnormal
bile ductule obstructed , abnormal
bile ductule dilated , abnormal
bile ductule lumenized , abnormal
Show

 ZFA:0005169 intrahepatic bile duct intrahepatic bile duct cell decreased amount , abnormal
intrahepatic bile duct distributed , abnormal
intrahepatic bile duct length , abnormal
intrahepatic bile duct decreased thickness , abnormal
intrahepatic bile duct dilated , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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