ENSDARG00000078459


Danio rerio

Features
Gene ID: ENSDARG00000078459
  
Biological name :cux1a
  
Synonyms : cut-like homeobox 1a / cux1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 32898533
Gene end: 33156789
  
Corresponding Affymetrix probe sets: Dr.17966.2.A1_at (Zebrafish Array)   Dr.18104.1.A1_at (Zebrafish Array)   Dr.19518.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000147023
Ensembl peptide - ENSDARP00000150637
Ensembl peptide - ENSDARP00000075613
Ensembl peptide - ENSDARP00000119597
NCBI entrez gene - 797445     See in Manteia.
swissprot - E7F4J9
swissprot - F1R782
ZFIN ID - ZDB-GENE-030131-5868
Ensembl - ENSDARG00000078459
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cux2b / cut-like homeobox 2b / CUX2* / P70298* / O14529* / cut like homeobox 2* / Homeobox protein cut-like 2 *ENSDARG0000008634535
cux1b / cut-like homeobox 1bENSDARG0000004313421
onecut3a / one cut homeobox 3a / Q8K557* / O60422* / ONECUT3* / one cut homeobox 3* / One cut domain family member 3 *ENSDARG000000563958
onecut1 / one cut homeobox 1ENSDARG000000079827
onecutl / one cut domain, family member, likeENSDARG000000402537
onecut3b / one cut homeobox 3b / O60422* / ONECUT3* / one cut homeobox 3*ENSDARG000000910597
onecut2 / one cut homeobox 2 / O95948* / Q6XBJ3* / One cut domain family member 2 *ENSDARG000000903877


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IBA
 biological_processGO:0048193 Golgi vesicle transport IBA
 cellular_componentGO:0000139 Golgi membrane IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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