ENSDARG00000009046


Danio rerio

Features
Gene ID: ENSDARG00000009046
  
Biological name :nphp1
  
Synonyms : nephronophthisis 1 / nphp1
  
Possible biological names infered from orthology : nephrocystin 1 / nephronophthisis 1 (juvenile) homolog (human) / O15259
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 22072337
Gene end: 22091141
  
Corresponding Affymetrix probe sets: Dr.11458.1.A1_at (Zebrafish Array)   Dr.19791.1.S1_at (Zebrafish Array)   NM_001077170_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000063715
Ensembl peptide - ENSDARP00000112995
NCBI entrez gene - 100002391     See in Manteia.
RefSeq - NM_001077170
RefSeq Peptide - NP_001070638
swissprot - F1R8C8
swissprot - E9QCT9
ZFIN ID - ZDB-GENE-060929-1234
Ensembl - ENSDARG00000009046
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NPHP1ENSGALG00000008195Gallus gallus
 NPHP1ENSG00000144061Homo sapiens
 Nphp1ENSMUSG00000027378Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR030642  Nephrocystin-1, SH3 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048793 pronephros development IMP
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Anchoring of the basal body to the plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord increased width , abnormal
notochord kinked , abnormal
Show

 ZFA:0000155 somite somite increased width , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
Show

 ZFA:0001620 pronephric proximal convoluted tubule pronephric proximal convoluted tubule morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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