ENSG00000144061


Homo sapiens

Features
Gene ID: ENSG00000144061
  
Biological name :NPHP1
  
Synonyms : nephrocystin 1 / NPHP1 / O15259
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q13
Gene start: 110122311
Gene end: 110205066
  
Corresponding Affymetrix probe sets: 206285_at (Human Genome U133 Plus 2.0 Array)   238843_at (Human Genome U133 Plus 2.0 Array)   238844_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000402176
Ensembl peptide - ENSP00000392562
Ensembl peptide - ENSP00000406453
Ensembl peptide - ENSP00000412351
Ensembl peptide - ENSP00000313169
Ensembl peptide - ENSP00000347452
Ensembl peptide - ENSP00000376953
Ensembl peptide - ENSP00000389879
NCBI entrez gene - 4867     See in Manteia.
OMIM - 607100
RefSeq - XM_017004218
RefSeq - NM_001128179
RefSeq - NM_207181
RefSeq - XM_005263676
RefSeq - XM_005263677
RefSeq - XM_005263678
RefSeq - XM_005263679
RefSeq - XM_006712551
RefSeq - XM_006712552
RefSeq - XM_011511244
RefSeq - NM_000272
RefSeq - NM_001128178
RefSeq Peptide - NP_001121650
RefSeq Peptide - NP_001121651
RefSeq Peptide - NP_997064
RefSeq Peptide - NP_000263
swissprot - C9JNM7
swissprot - O15259
swissprot - H7C014
swissprot - H7C2K4
swissprot - C9J082
Ensembl - ENSG00000144061
  
Related genetic diseases (OMIM): 256100 - Nephronophthisis 1, juvenile, 256100
  266900 - Senior-Loken syndrome-1, 266900
  609583 - Joubert syndrome 4, 609583
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nphp1ENSDARG00000009046Danio rerio
 NPHP1ENSGALG00000008195Gallus gallus
 Nphp1ENSMUSG00000027378Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR030642  Nephrocystin-1, SH3 domain
 IPR036028  SH3-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction NAS
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007588 excretion TAS
 biological_processGO:0007632 visual behavior NAS
 biological_processGO:0030030 cell projection organization ISS
 biological_processGO:0030036 actin cytoskeleton organization NAS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0048515 spermatid differentiation ISS
 biological_processGO:0060041 retina development in camera-type eye ISS
 biological_processGO:0097711 ciliary basal body-plasma membrane docking TAS
 biological_processGO:0098609 cell-cell adhesion NAS
 biological_processGO:1903348 positive regulation of bicellular tight junction assembly IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005911 cell-cell junction IDA
 cellular_componentGO:0005912 adherens junction IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0016020 membrane NAS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031514 motile cilium IDA
 cellular_componentGO:0032391 photoreceptor connecting cilium ISS
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005198 structural molecule activity NAS
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Anchoring of the basal body to the plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000090 Nephronophthisis 
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 HP:0000092 Tubular atrophy 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000103 Polyuria 
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 HP:0000108 Corticomedullary cysts 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000276 Long face 
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 HP:0000365 Hearing loss 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000547 Tapetoretinal degeneration 
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 HP:0000556 Retinal dystrophy 
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 HP:0000571 Hypometric saccades 
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000657 Oculomotor apraxia 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
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 HP:0001161 Polydactyly (hands) 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001395 Hepatic fibrosis 
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 HP:0001425 Heterogeneous 
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 HP:0001510 Growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001903 Anemia 
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 HP:0001959 Polydipsia 
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 HP:0002084 Encephalocele 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002167 Neurological speech impairment 
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 HP:0002194 Delayed gross motor development 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002404 Thick and elongated superior cerebellar peduncles 
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 HP:0002419 Molar tooth sign on MRI 
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 HP:0002553 Arched eyebrows 
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 HP:0002612 Congenital hepatic fibrosis 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003158 Hyposthenuria 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003774 End stage renal disease 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
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 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
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 HP:0005576 Tubulointerstitial fibrosis 
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 HP:0005583 Tubular basement membrane disintegration 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008209 Premature ovarian failure 
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 HP:0008724 Hypoplastic ovary 
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 HP:0008736 Hypoplasia of penis 
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
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 HP:0011933 Elongated superior cerebellar peduncle "Increased length of the `superior cerebellar peduncle` (FMA:72495)." [HPO:probinson]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000127328 Q96QF0 / RAB3IP / RAB3A interacting protein  / complex / reaction
 ENSG00000103769 P62491 / RAB11A / RAB11A, member RAS oncogene family  / complex / reaction
 ENSG00000103494 Q68CZ1 / RPGRIP1L / RPGRIP1 like  / complex
 ENSG00000131697 NPHP4 / O75161 / nephrocystin 4  / complex






 

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