ENSG00000131697


Homo sapiens

Features
Gene ID: ENSG00000131697
  
Biological name :NPHP4
  
Synonyms : nephrocystin 4 / NPHP4 / O75161
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.31
Gene start: 5862811
Gene end: 5992473
  
Corresponding Affymetrix probe sets: 213471_at (Human Genome U133 Plus 2.0 Array)   216344_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000367398
Ensembl peptide - ENSP00000423747
Ensembl peptide - ENSP00000425745
Ensembl peptide - ENSP00000481831
Ensembl peptide - ENSP00000367411
NCBI entrez gene - 261734     See in Manteia.
OMIM - 607215
RefSeq - XM_017001003
RefSeq - XM_017000997
RefSeq - XM_017000998
RefSeq - XM_017000999
RefSeq - XM_017001000
RefSeq - XM_017001001
RefSeq - XM_017001002
RefSeq - NM_001291593
RefSeq - NM_001291594
RefSeq - NM_015102
RefSeq - XM_006710563
RefSeq - XM_011541213
RefSeq - XM_011541214
RefSeq - XM_011541215
RefSeq - XM_011541216
RefSeq - XM_011541217
RefSeq - XM_011541218
RefSeq - XM_017000996
RefSeq Peptide - NP_055917
RefSeq Peptide - NP_001278522
RefSeq Peptide - NP_001278523
swissprot - H0YA08
swissprot - O75161
swissprot - D6RA06
Ensembl - ENSG00000131697
  
Related genetic diseases (OMIM): 606966 - Nephronophthisis 4, 606966
  606996 - Senior-Loken syndrome 4, 606996
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nphp4ENSDARG00000069014Danio rerio
 ENSGALG00000039646Gallus gallus
 ENSGALG00000000966Gallus gallus
 Nphp4ENSMUSG00000039577Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013783  Immunoglobulin-like fold
 IPR029775  Nephrocystin-4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction NAS
 biological_processGO:0007632 visual behavior NAS
 biological_processGO:0030036 actin cytoskeleton organization NAS
 biological_processGO:0030317 flagellated sperm motility IEA
 biological_processGO:0035329 hippo signaling TAS
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IDA
 biological_processGO:0097711 ciliary basal body-plasma membrane docking TAS
 biological_processGO:0098609 cell-cell adhesion NAS
 biological_processGO:1903348 positive regulation of bicellular tight junction assembly IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005911 cell-cell junction IDA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0035869 ciliary transition zone IEA
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097470 ribbon synapse IEA
 cellular_componentGO:0097546 ciliary base IEA
 cellular_componentGO:0097730 non-motile cilium IEA
 molecular_functionGO:0005198 structural molecule activity NAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Signaling by Hippo
Anchoring of the basal body to the plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000090 Nephronophthisis 
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 HP:0000092 Tubular atrophy 
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 HP:0000103 Polyuria 
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 HP:0000108 Corticomedullary cysts 
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000556 Retinal dystrophy 
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001141 Severe visual impairment 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001510 Growth retardation 
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 HP:0001583 Rotary nystagmus 
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 HP:0001903 Anemia 
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 HP:0001959 Polydipsia 
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 HP:0002612 Congenital hepatic fibrosis 
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 HP:0003774 End stage renal disease 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
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 HP:0005576 Tubulointerstitial fibrosis 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008209 Premature ovarian failure 
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 HP:0010579 Cone-shaped epiphyses 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000127328 Q96QF0 / RAB3IP / RAB3A interacting protein  / reaction / complex
 ENSG00000131023 LATS1 / O95835 / large tumor suppressor kinase 1  / complex / reaction
 ENSG00000103769 P62491 / RAB11A / RAB11A, member RAS oncogene family  / reaction / complex
 ENSG00000144061 NPHP1 / O15259 / nephrocystin 1  / complex
 ENSG00000150457 LATS2 / Q9NRM7 / large tumor suppressor kinase 2  / complex / reaction
 ENSG00000103494 Q68CZ1 / RPGRIP1L / RPGRIP1 like  / complex






 

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contact: otassy@igbmc.fr