ENSDARG00000009170


Danio rerio

Features
Gene ID: ENSDARG00000009170
  
Biological name :ctr9
  
Synonyms : ctr9 / CTR9 homolog, Paf1/RNA polymerase II complex component
  
Possible biological names infered from orthology : Q62018 / Q6PD62 / RNA polymerase-associated
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 66655729
Gene end: 66693712
  
Corresponding Affymetrix probe sets: Dr.21765.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000016047
NCBI entrez gene - 100036549     See in Manteia.
RefSeq - NM_001083583
RefSeq Peptide - NP_001077052
swissprot - A3KDM3
ZFIN ID - ZDB-GENE-030131-3782
Ensembl - ENSDARG00000009170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CTR9ENSGALG00000005618Gallus gallus
 CTR9ENSG00000198730Homo sapiens
 Ctr9ENSMUSG00000005609Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0014032 neural crest cell development IMP
 biological_processGO:0016570 histone modification IEA
 biological_processGO:0043473 pigmentation IMP
 biological_processGO:0051569 regulation of histone H3-K4 methylation IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0016593 Cdc73/Paf1 complex IDA
 molecular_functionGO:0000993 RNA polymerase II core binding IBA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Transcription Elongation
E3 ubiquitin ligases ubiquitinate target proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000051 otic vesicle otic vesicle decreased size , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000114 heart heart hypoplastic , abnormal
heart malformed , abnormal
Show

 ZFA:0000217 inner ear inner ear lacks all parts of type otolith , abnormal
Show

 ZFA:0000360 heart tube heart tube aplastic , abnormal
heart tube hypoplastic , abnormal
heart tube malformed , abnormal
Show

 ZFA:0001094 whole organism whole organism curved ventral , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
post-vent region somite border disorganized , abnormal
Show

 ZFA:0005490 myocardial precursor myocardial precursor decreased amount , abnormal
Show

 ZFA:0009090 pigment cell pigment cell absent , abnormal
Show

 ZFA:0009091 melanocyte melanocyte absent , abnormal
Show

 ZFA:0009165 neural crest cell neural crest cell absent , abnormal
neural crest cell decreased amount , abnormal
Show

 ZFA:0009316 cardiac muscle cell cardiac muscle cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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