ENSDARG00000009342


Danio rerio

Features
Gene ID: ENSDARG00000009342
  
Biological name :txndc5
  
Synonyms : thioredoxin domain containing 5 / txndc5
  
Possible biological names infered from orthology : Q8NBS9 / Q91W90
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 7941373
Gene end: 7957581
  
Corresponding Affymetrix probe sets: Dr.1932.1.A1_at (Zebrafish Array)   Dr.25420.1.S1_at (Zebrafish Array)   Dr.25420.1.S1_a_at (Zebrafish Array)   Dr.25420.1.S1_x_at (Zebrafish Array)   Dr.25420.2.S1_at (Zebrafish Array)   Dr.25420.3.S1_at (Zebrafish Array)   NM_213016_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116609
NCBI entrez gene - 406289     See in Manteia.
RefSeq - NM_213016
RefSeq - XM_005162503
RefSeq Peptide - NP_998181
swissprot - F1R184
ZFIN ID - ZDB-GENE-040426-1951
Ensembl - ENSDARG00000009342
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TXNDC5ENSGALG00000012784Gallus gallus
 Q8NBS9ENSG00000239264Homo sapiens
 Q91W90ENSMUSG00000038991Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdia5 / protein disulfide isomerase family A, member 5 / Q14554* / Q921X9* / Protein disulfide-isomerase A5 *ENSDARG0000006924228
dnajc10 / DnaJ (Hsp40) homolog, subfamily C, member 10 / Q8IXB1* / Q9DC23* / DnaJ homolog subfamily C member 10 * / DnaJ heat shock protein family (Hsp40) member C10*ENSDARG0000007472724
pdia6 / protein disulfide isomerase family A, member 6 / Q15084* / protein disulfide isomerase associated 6*ENSDARG0000000900121


Protein motifs (from Interpro)
Interpro ID Name
 IPR005788  Disulphide isomerase
 IPR012336  Thioredoxin-like fold
 IPR013766  Thioredoxin domain
 IPR017937  Thioredoxin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006457 protein folding IBA
 biological_processGO:0034976 response to endoplasmic reticulum stress IBA
 biological_processGO:0043277 apoptotic cell clearance IBA
 biological_processGO:0045454 cell redox homeostasis IEA
 cellular_componentGO:0005783 endoplasmic reticulum IBA
 molecular_functionGO:0003756 protein disulfide isomerase activity IBA
 molecular_functionGO:0016853 isomerase activity IEA


Pathways (from Reactome)
Pathway description
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr