ENSDARG00000009350


Danio rerio

Features
Gene ID: ENSDARG00000009350
  
Biological name :atg3
  
Synonyms : atg3 / autophagy related 3 / Q6PFS7
  
Possible biological names infered from orthology : Q9CPX6 / Q9NT62 / Ubiquitin-like-conjugating enzyme ATG3
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 7109954
Gene end: 7123210
  
Corresponding Affymetrix probe sets: Dr.1496.1.A1_at (Zebrafish Array)   NM_200022_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000041303
NCBI entrez gene - 336632     See in Manteia.
RefSeq - NM_200022
RefSeq Peptide - NP_956316
swissprot - Q6PFS7
ZFIN ID - ZDB-GENE-030131-8576
Ensembl - ENSDARG00000009350
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATG3ENSGALG00000015204Gallus gallus
 ATG3ENSG00000144848Homo sapiens
 Atg3ENSMUSG00000022663Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007134  Autophagy-related protein 3, N-terminal
 IPR007135  Autophagy-related protein 3
 IPR019461  Autophagy-related protein 3, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly ISS
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0043653 mitochondrial fragmentation involved in apoptotic process ISS
 biological_processGO:0044804 autophagy of nucleus IBA
 cellular_componentGO:0000153 cytoplasmic ubiquitin ligase complex IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019776 Atg8 ligase activity ISS
 molecular_functionGO:0019777 Atg12 transferase activity ISS


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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