ENSDARG00000009748


Danio rerio

Features
Gene ID: ENSDARG00000009748
  
Biological name :dffb
  
Synonyms : dffb / DNA fragmentation factor, beta polypeptide (caspase-activated DNase)
  
Possible biological names infered from orthology : DNA fragmentation factor subunit beta / O54788 / O76075
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 22277198
Gene end: 22283112
  
Corresponding Affymetrix probe sets: DrAffx.1.51.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000017240
swissprot - Q1L9C6
ZFIN ID - ZDB-GENE-030826-4
Ensembl - ENSDARG00000009748
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DFFBENSGALG00000036295Gallus gallus
 DFFBENSG00000169598Homo sapiens
 DffbENSMUSG00000029027Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003508  CIDE-N domain
 IPR015311  Apoptosis, DNA fragmentation factor 40kDa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006309 apoptotic DNA fragmentation IEA
 biological_processGO:0006915 apoptotic process IEA
 cellular_componentGO:0000790 nuclear chromatin IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004536 deoxyribonuclease activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Activation of DNA fragmentation factor


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr