ENSDARG00000009753


Danio rerio

Features
Gene ID: ENSDARG00000009753
  
Biological name :sf3b6
  
Synonyms : sf3b6 / splicing factor 3b, subunit 6
  
Possible biological names infered from orthology : P59708 / Q9Y3B4
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 35433192
Gene end: 35437940
  
Corresponding Affymetrix probe sets: Dr.3658.1.S1_at (Zebrafish Array)   NM_001002067_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000006812
NCBI entrez gene - 415157     See in Manteia.
RefSeq - NM_001002067
RefSeq Peptide - NP_001002067
swissprot - Q6IQM0
ZFIN ID - ZDB-GENE-040625-36
Ensembl - ENSDARG00000009753
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SF3B6ENSGALG00000016501Gallus gallus
 SF3B6ENSG00000115128Homo sapiens
 Sf3b6ENSMUSG00000037361Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034150  SF3B14, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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