ENSGALG00000016501


Gallus gallus

Features
Gene ID: ENSGALG00000016501
  
Biological name :SF3B6
  
Synonyms : SF3B6 / splicing factor 3b subunit 6
  
Possible biological names infered from orthology : P59708 / Q9Y3B4
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 104671543
Gene end: 104675446
  
Corresponding Affymetrix probe sets: Gga.2001.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026567
NCBI entrez gene - 421976     See in Manteia.
RefSeq - XM_419986
swissprot - E1BW94
Ensembl - ENSGALG00000016501
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b6ENSDARG00000009753Danio rerio
 SF3B6ENSG00000115128Homo sapiens
 Sf3b6ENSMUSG00000037361Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0001825 blastocyst formation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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