ENSG00000115128


Homo sapiens

Features
Gene ID: ENSG00000115128
  
Biological name :SF3B6
  
Synonyms : Q9Y3B4 / SF3B6 / splicing factor 3b subunit 6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p23.3
Gene start: 24067584
Gene end: 24076443
  
Corresponding Affymetrix probe sets: 1561923_a_at (Human Genome U133 Plus 2.0 Array)   223416_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000233468
NCBI entrez gene - 51639     See in Manteia.
OMIM - 607835
RefSeq - NM_016047
RefSeq Peptide - NP_057131
swissprot - Q9Y3B4
Ensembl - ENSG00000115128
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b6ENSDARG00000009753Danio rerio
 SF3B6ENSGALG00000016501Gallus gallus
 Sf3b6ENSMUSG00000037361Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034150  SF3B14, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0001825 blastocyst formation IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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