ENSDARG00000010010


Danio rerio

Features
Gene ID: ENSDARG00000010010
  
Biological name :trim13
  
Synonyms : trim13 / tripartite motif containing 13
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM13 / O60858 / Q9CYB0
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 29642857
Gene end: 29654998
  
Corresponding Affymetrix probe sets: Dr.16750.1.S1_at (Zebrafish Array)   Dr.16750.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000143359
Ensembl peptide - ENSDARP00000013495
Ensembl peptide - ENSDARP00000129064
NCBI entrez gene - 553630     See in Manteia.
RefSeq - XM_005167703
swissprot - H9KUW1
ZFIN ID - ZDB-GENE-050522-516
Ensembl - ENSDARG00000010010
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM13ENSGALG00000017011Gallus gallus
 O60858ENSG00000204977Homo sapiens
 Q9CYB0ENSMUSG00000035235Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim59 / tripartite motif containing 59 / Q8IWR1* / Q922Y2* / Tripartite motif-containing protein 59 *ENSDARG0000007923829


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
ER Quality Control Compartment (ERQC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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