ENSMUSG00000035235


Mus musculus

Features
Gene ID: ENSMUSG00000035235
  
Biological name :Trim13
  
Synonyms : E3 ubiquitin-protein ligase TRIM13 / Q9CYB0 / Trim13
  
Possible biological names infered from orthology : O60858 / tripartite motif containing 13
  
Species: Mus musculus
  
Chr. number: 14
Strand: 1
Band: D1
Gene start: 61598247
Gene end: 61605946
  
Corresponding Affymetrix probe sets: 10415784 (MoGene1.0st)   1417888_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000045009
Ensembl peptide - ENSMUSP00000128509
NCBI entrez gene - 66597     See in Manteia.
MGI - MGI:1913847
RefSeq - XM_006519392
RefSeq - NM_001164220
RefSeq - NM_023233
RefSeq Peptide - NP_075722
RefSeq Peptide - NP_001157692
swissprot - Q9CYB0
Ensembl - ENSMUSG00000035235
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim13ENSDARG00000010010Danio rerio
 TRIM13ENSGALG00000017011Gallus gallus
 O60858ENSG00000204977Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q922Y2 / Trim59 / Tripartite motif-containing protein 59 / Q8IWR1* / tripartite motif containing 59*ENSMUSG0000003431728


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0010332 response to gamma radiation ISS
 biological_processGO:0010942 positive regulation of cell death ISO
 biological_processGO:0016239 positive regulation of macroautophagy ISS
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway ISS
 biological_processGO:0032897 negative regulation of viral transcription ISO
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling ISO
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process ISS
 biological_processGO:0045087 innate immune response ISO
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity ISO
 biological_processGO:0051865 protein autoubiquitination ISO
 biological_processGO:1902187 negative regulation of viral release from host cell ISO
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm ISO
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0097038 perinuclear endoplasmic reticulum ISS
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISO
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
ER Quality Control Compartment (ERQC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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