ENSG00000204977


Homo sapiens

Features
Gene ID: ENSG00000204977
  
Biological name :TRIM13
  
Synonyms : O60858 / TRIM13 / tripartite motif containing 13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q14.2
Gene start: 49995888
Gene end: 50020481
  
Corresponding Affymetrix probe sets: 1569142_at (Human Genome U133 Plus 2.0 Array)   203659_s_at (Human Genome U133 Plus 2.0 Array)   229943_at (Human Genome U133 Plus 2.0 Array)   230192_at (Human Genome U133 Plus 2.0 Array)   239098_at (Human Genome U133 Plus 2.0 Array)   240288_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000404586
Ensembl peptide - ENSP00000399206
Ensembl peptide - ENSP00000412943
Ensembl peptide - ENSP00000348299
Ensembl peptide - ENSP00000367424
Ensembl peptide - ENSP00000367425
NCBI entrez gene - 10206     See in Manteia.
OMIM - 605661
RefSeq - NM_005798
RefSeq - NM_001007278
RefSeq - NM_052811
RefSeq - NM_213590
RefSeq Peptide - NP_998755
RefSeq Peptide - NP_001007279
RefSeq Peptide - NP_005789
RefSeq Peptide - NP_434698
swissprot - X6R9U5
swissprot - O60858
swissprot - A0A024RDU3
swissprot - X6RH27
Ensembl - ENSG00000204977
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim13ENSDARG00000010010Danio rerio
 TRIM13ENSGALG00000017011Gallus gallus
 Q9CYB0ENSMUSG00000035235Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8IWR1 / TRIM59 / tripartite motif containing 59ENSG0000021318627


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0009653 anatomical structure morphogenesis TAS
 biological_processGO:0010332 response to gamma radiation IEP
 biological_processGO:0010942 positive regulation of cell death IDA
 biological_processGO:0016239 positive regulation of macroautophagy IDA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IDA
 biological_processGO:0032897 negative regulation of viral transcription IDA
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IDA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IMP
 biological_processGO:0051865 protein autoubiquitination IDA
 biological_processGO:1902187 negative regulation of viral release from host cell IDA
 biological_processGO:1904380 endoplasmic reticulum mannose trimming TAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0044322 endoplasmic reticulum quality control compartment IEA
 cellular_componentGO:0097038 perinuclear endoplasmic reticulum IDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0004871 obsolete signal transducer activity HMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
ER Quality Control Compartment (ERQC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr