ENSDARG00000010482


Danio rerio

Features
Gene ID: ENSDARG00000010482
  
Biological name :prg4a
  
Synonyms : prg4a / proteoglycan 4a
  
Possible biological names infered from orthology : PRG4 / proteoglycan 4 / proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) / Q92954
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 20793982
Gene end: 20812059
  
Corresponding Affymetrix probe sets: Dr.24132.1.S1_at (Zebrafish Array)   NM_212753_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000012078
Ensembl peptide - ENSDARP00000122746
Ensembl peptide - ENSDARP00000119443
NCBI entrez gene - 336351     See in Manteia.
RefSeq - NM_212753
RefSeq - XM_005163364
RefSeq Peptide - NP_997918
swissprot - F1R2Z8
swissprot - B8JMI5
swissprot - B8JMI4
ZFIN ID - ZDB-GENE-030131-8295
Ensembl - ENSDARG00000010482
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRG4ENSG00000116690Homo sapiens
 Prg4ENSMUSG00000006014Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prg4b / proteoglycan 4b / PRG4* / Q92954* / proteoglycan 4* / proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)*ENSDARG0000002816332
vtna / vitronectin a / VTN* / P04004* / P29788* / AC002094.3* / vitronectin*ENSDARG0000005538821
vtnb / vitronectin b / VTN* / P04004* / P29788* / AC002094.3* / vitronectin*ENSDARG0000005383120


Protein motifs (from Interpro)
Interpro ID Name
 IPR000585  Hemopexin-like domain
 IPR001212  Somatomedin B domain
 IPR018487  Hemopexin-like repeats
 IPR020436  Somatomedin B, chordata


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0006955 immune response IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0005044 scavenger receptor activity IEA
 molecular_functionGO:0030247 polysaccharide binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr