ENSDARG00000028163


Danio rerio

Features
Gene ID: ENSDARG00000028163
  
Biological name :prg4b
  
Synonyms : prg4b / proteoglycan 4b
  
Possible biological names infered from orthology : PRG4 / proteoglycan 4 / proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) / Q92954
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 34029820
Gene end: 34039638
  
Corresponding Affymetrix probe sets: Dr.2655.1.S1_at (Zebrafish Array)   Dr.2655.3.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112635
Ensembl peptide - ENSDARP00000118320
NCBI entrez gene - 553377     See in Manteia.
RefSeq - NM_001328330
RefSeq Peptide - NP_001315259
swissprot - F1REF9
swissprot - A5PMB6
ZFIN ID - ZDB-GENE-041014-324
Ensembl - ENSDARG00000028163
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRG4ENSG00000116690Homo sapiens
 Prg4ENSMUSG00000006014Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prg4a / proteoglycan 4a / PRG4* / Q92954* / proteoglycan 4* / proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)*ENSDARG0000001048222
vtna / vitronectin a / VTN* / P04004* / P29788* / AC002094.3* / vitronectin*ENSDARG0000005538816
vtnb / vitronectin b / VTN* / P04004* / P29788* / AC002094.3* / vitronectin*ENSDARG0000005383114


Protein motifs (from Interpro)
Interpro ID Name
 IPR000585  Hemopexin-like domain
 IPR001212  Somatomedin B domain
 IPR018486  Hemopexin, conserved site
 IPR018487  Hemopexin-like repeats
 IPR020436  Somatomedin B, chordata


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0006955 immune response IEA
 molecular_functionGO:0005044 scavenger receptor activity IEA
 molecular_functionGO:0030247 polysaccharide binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr