ENSDARG00000055388


Danio rerio

Features
Gene ID: ENSDARG00000055388
  
Biological name :vtna
  
Synonyms : vitronectin a / vtna
  
Possible biological names infered from orthology : AC002094.3 / P04004 / P29788 / vitronectin / VTN
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 28202170
Gene end: 28208926
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000072202
NCBI entrez gene - 553699     See in Manteia.
RefSeq - NM_001020672
RefSeq - XM_021481411
RefSeq Peptide - NP_001018508
swissprot - F1R4H1
ZFIN ID - ZDB-GENE-050522-440
Ensembl - ENSDARG00000055388
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VTNENSGALG00000003589Gallus gallus
 AC002094.3ENSG00000273171Homo sapiens
 VTNENSG00000109072Homo sapiens
 VtnENSMUSG00000017344Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vtnb / vitronectin b / VTN* / P04004* / P29788* / AC002094.3* / vitronectin*ENSDARG0000005383146
prg4b / proteoglycan 4b / PRG4* / Q92954* / proteoglycan 4* / proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)*ENSDARG0000002816322
prg4a / proteoglycan 4a / PRG4* / Q92954* / proteoglycan 4* / proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)*ENSDARG0000001048219


Protein motifs (from Interpro)
Interpro ID Name
 IPR000585  Hemopexin-like domain
 IPR001212  Somatomedin B domain
 IPR018487  Hemopexin-like repeats
 IPR020436  Somatomedin B, chordata


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0006955 immune response IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0005044 scavenger receptor activity IEA
 molecular_functionGO:0030247 polysaccharide binding IEA


Pathways (from Reactome)
Pathway description
Molecules associated with elastic fibres
Integrin cell surface interactions
Syndecan interactions
ECM proteoglycans
Regulation of Complement cascade


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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