ENSDARG00000010941


Danio rerio

Features
Gene ID: ENSDARG00000010941
  
Biological name :pomgnt2
  
Synonyms : pomgnt2 / protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) / Q5NDE5
  
Possible biological names infered from orthology : Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 / Q8BW41 / Q8NAT1
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 8139515
Gene end: 8162380
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115932
Ensembl peptide - ENSDARP00000151467
NCBI entrez gene - 497644     See in Manteia.
RefSeq - NM_001012384
RefSeq Peptide - NP_001012384
swissprot - F1QAS8
swissprot - Q5NDE5
ZFIN ID - ZDB-GENE-050522-242
Ensembl - ENSDARG00000010941
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5NDE8ENSGALG00000011518Gallus gallus
 Q8NAT1ENSG00000144647Homo sapiens
 Q8BW41ENSMUSG00000066235Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
eogt / EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase / Q5NDL2* / Q8BYW9* / EGF domain specific O-linked N-acetylglucosamine transferase*ENSDARG0000002285315


Protein motifs (from Interpro)
Interpro ID Name
 IPR003961  Fibronectin type III
 IPR007657  Glycosyltransferase 61
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration ISS
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006493 protein O-linked glycosylation ISS
 biological_processGO:0007420 brain development IMP
 biological_processGO:0035269 protein O-linked mannosylation ISS
 biological_processGO:0048747 muscle fiber development IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005783 endoplasmic reticulum ISS
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008375 acetylglucosaminyltransferase activity ISS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA


Pathways (from Reactome)
Pathway description
O-linked glycosylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased volume , abnormal
Show

 ZFA:0000107 eye eye hypoplastic , abnormal
eye aplastic , abnormal
Show

 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium disorganized , abnormal
Show

 ZFA:0000155 somite somite U-shaped , abnormal
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 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism dead , abnormal
whole organism decreased mobility , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head hydrocephalic , abnormal
Show

 ZFA:0001117 post-vent region post-vent region increased thickness , abnormal
post-vent region bent , abnormal
Show

 ZFA:0001261 ventricular system ventricular system hemorrhagic , abnormal
Show

 ZFA:0005145 muscle muscle myofibril disorganized , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000016153 dag1 / dystroglycan 1 / Q14118* / Q62165* / Dystroglycan Alpha-dystroglycan Beta-dystroglycan*  / reaction






 

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