ENSDARG00000011247


Danio rerio

Features
Gene ID: ENSDARG00000011247
  
Biological name :rnpc3
  
Synonyms : RNA-binding region (RNP1, RRM) containing 3 / rnpc3
  
Possible biological names infered from orthology : Q3UZ01 / Q96LT9 / RNA-binding protein 40
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 28934875
Gene end: 28968355
  
Corresponding Affymetrix probe sets: Dr.15660.1.S1_a_at (Zebrafish Array)   NM_001039930_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000155505
Ensembl peptide - ENSDARP00000019728
Ensembl peptide - ENSDARP00000127851
Ensembl peptide - ENSDARP00000155778
NCBI entrez gene - 565672     See in Manteia.
RefSeq - NM_001039930
RefSeq Peptide - NP_001035019
swissprot - F1Q8J0
swissprot - X1WCA8
ZFIN ID - ZDB-GENE-060312-35
Ensembl - ENSDARG00000011247
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNPC3ENSGALG00000005162Gallus gallus
 RNPC3ENSG00000185946Homo sapiens
 Rnpc3ENSMUSG00000027981Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm41 / RNA binding motif protein 41 / Q8JZV4* / Q96IZ5* / RNA-binding protein 41 *ENSDARG0000005409614


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034147  RBM40, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IMP
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0031016 pancreas development IMP
 biological_processGO:0048565 digestive tract development IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030626 U12 snRNA binding IBA
 molecular_functionGO:0097157 pre-mRNA intronic binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000076 swim bladder swim bladder malformed , abnormal
Show

 ZFA:0000084 yolk yolk physical object quality , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000123 liver liver decreased size , abnormal
Show

 ZFA:0000140 pancreas pancreas decreased size , abnormal
Show

 ZFA:0001076 intestinal bulb intestinal bulb decreased size , abnormal
Show

 ZFA:0005124 intestinal epithelium intestinal epithelium decreased thickness , abnormal
intestinal epithelium surface feature shape , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr