ENSG00000185946


Homo sapiens

Features
Gene ID: ENSG00000185946
  
Biological name :RNPC3
  
Synonyms : Q96LT9 / RNA binding region (RNP1, RRM) containing 3 / RNPC3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p21.1
Gene start: 103525691
Gene end: 103555239
  
Corresponding Affymetrix probe sets: 226975_at (Human Genome U133 Plus 2.0 Array)   226999_at (Human Genome U133 Plus 2.0 Array)   228023_x_at (Human Genome U133 Plus 2.0 Array)   229903_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000436315
Ensembl peptide - ENSP00000437278
Ensembl peptide - ENSP00000391432
Ensembl peptide - ENSP00000431344
Ensembl peptide - ENSP00000432886
Ensembl peptide - ENSP00000434721
Ensembl peptide - ENSP00000435440
NCBI entrez gene - 55599     See in Manteia.
RefSeq - NM_017619
RefSeq Peptide - NP_060089
swissprot - H0YE07
swissprot - H0YEB8
swissprot - E9PPV2
swissprot - Q96LT9
swissprot - X6RLP6
Ensembl - ENSG00000185946
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnpc3ENSDARG00000011247Danio rerio
 RNPC3ENSGALG00000005162Gallus gallus
 Rnpc3ENSMUSG00000027981Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBM41 / Q96IZ5 / RNA binding motif protein 41ENSG0000008968218


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034147  RBM40, RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0032502 developmental process IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030626 U12 snRNA binding IBA
 molecular_functionGO:0097157 pre-mRNA intronic binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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