ENSMUSG00000027981


Mus musculus

Features
Gene ID: ENSMUSG00000027981
  
Biological name :Rnpc3
  
Synonyms : Q3UZ01 / RNA-binding protein 40 / Rnpc3
  
Possible biological names infered from orthology : Q96LT9 / RNA binding region (RNP1, RRM) containing 3
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F3
Gene start: 113605067
Gene end: 113630149
  
Corresponding Affymetrix probe sets: 10501567 (MoGene1.0st)   1424589_s_at (Mouse Genome 430 2.0 Array)   1429504_at (Mouse Genome 430 2.0 Array)   1437461_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000089792
Ensembl peptide - ENSMUSP00000102145
Ensembl peptide - ENSMUSP00000102146
Ensembl peptide - ENSMUSP00000115492
NCBI entrez gene - 67225     See in Manteia.
MGI - MGI:1914475
RefSeq - NM_001038696
RefSeq - NM_001287015
RefSeq - NM_026043
RefSeq Peptide - NP_001033785
RefSeq Peptide - NP_001273944
RefSeq Peptide - NP_080319
swissprot - Q3UZ01
swissprot - F6TN13
Ensembl - ENSMUSG00000027981
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnpc3ENSDARG00000011247Danio rerio
 RNPC3ENSGALG00000005162Gallus gallus
 RNPC3ENSG00000185946Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rbm41 / Q8JZV4 / RNA-binding protein 41 / Q96IZ5* / RNA binding motif protein 41*ENSMUSG0000003143318


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034147  RBM40, RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0032502 developmental process IBA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005689 U12-type spliceosomal complex ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030626 U12 snRNA binding IBA
 molecular_functionGO:0097157 pre-mRNA intronic binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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