ENSDARG00000011405


Danio rerio

Features
Gene ID: ENSDARG00000011405
  
Biological name :rps9
  
Synonyms : ribosomal protein S9 / rps9
  
Possible biological names infered from orthology : 40S ribosomal protein S9 / P46781 / Q6ZWN5
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 31921812
Gene end: 31927522
  
Corresponding Affymetrix probe sets: Dr.1360.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000144431
Ensembl peptide - ENSDARP00000147936
Ensembl peptide - ENSDARP00000112704
Ensembl peptide - ENSDARP00000114119
Ensembl peptide - ENSDARP00000114316
NCBI entrez gene - 114420     See in Manteia.
swissprot - A3KQ06
swissprot - Q6P5M3
ZFIN ID - ZDB-GENE-010724-15
Ensembl - ENSDARG00000011405
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS9ENSG00000170889Homo sapiens
 Rps9ENSMUSG00000006333Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001912  Ribosomal protein S4/S9, N-terminal
 IPR002942  RNA-binding S4 domain
 IPR005710  Ribosomal protein S4/S9, eukaryotic/archaeal
 IPR018079  Ribosomal protein S4, conserved site
 IPR022801  Ribosomal protein S4/S9


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0045903 positive regulation of translational fidelity IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0019843 rRNA binding IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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