ENSDARG00000012306


Danio rerio

Features
Gene ID: ENSDARG00000012306
  
Biological name :syt13
  
Synonyms : synaptotagmin XIII / syt13
  
Possible biological names infered from orthology : Q7L8C5 / Q9EQT6 / synaptotagmin 13
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 38685654
Gene end: 38737718
  
Corresponding Affymetrix probe sets: Dr.17253.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000013748
Ensembl peptide - ENSDARP00000119419
Ensembl peptide - ENSDARP00000145677
swissprot - F1QYV3
swissprot - F1R3N0
ZFIN ID - ZDB-GENE-050417-135
Ensembl - ENSDARG00000012306
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYT13ENSGALG00000008055Gallus gallus
 SYT13ENSG00000019505Homo sapiens
 Syt13ENSMUSG00000027220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
syt17 / synaptotagmin XVII / Q9BSW7* / synaptotagmin 17*ENSDARG0000006074121
syt12 / synaptotagmin XII / Q8IV01* / Q920N7* / synaptotagmin 12*ENSDARG0000010177621
syt15 / synaptotagmin XV / Q9BQS2* / Q8C6N3* / FO681492.1* / synaptotagmin 15*ENSDARG0000007992618
syt14a / synaptotagmin XIVa / SYT14* / Q7TN84* / Q8NB59* / synaptotagmin 14*ENSDARG0000001093416
BX571884.1ENSDARG0000010707715
syt14b / synaptotagmin XIVb / SYT14* / Q7TN84* / Q8NB59* / synaptotagmin 14*ENSDARG0000000189114
syt16 / synaptotagmin XVI / Q17RD7* / Q7TN83* / synaptotagmin 16*ENSDARG000000307618


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR028692  Synaptotagmin-13


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0017158 regulation of calcium ion-dependent exocytosis IBA
 biological_processGO:0048791 calcium ion-regulated exocytosis of neurotransmitter IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0005544 calcium-dependent phospholipid binding IBA
 molecular_functionGO:0019905 syntaxin binding IBA
 molecular_functionGO:0030276 clathrin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009044 blood cell blood cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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