ENSDARG00000012314


Danio rerio

Features
Gene ID: ENSDARG00000012314
  
Biological name :usp25
  
Synonyms : ubiquitin specific peptidase 25 / usp25
  
Possible biological names infered from orthology : P57080 / Q9UHP3
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 38168158
Gene end: 38243851
  
Corresponding Affymetrix probe sets: Dr.12045.1.S1_at (Zebrafish Array)   Dr.25104.1.A1_at (Zebrafish Array)   NM_001001886_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123830
Ensembl peptide - ENSDARP00000138813
NCBI entrez gene - 406790     See in Manteia.
RefSeq - NM_001001886
RefSeq Peptide - NP_001001886
swissprot - F8W4Z8
swissprot - A0A0R4IQS2
ZFIN ID - ZDB-GENE-040426-2847
Ensembl - ENSDARG00000012314
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP25ENSGALG00000015693Gallus gallus
 USP25ENSG00000155313Homo sapiens
 Usp25ENSMUSG00000022867Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp28 / ubiquitin specific peptidase 28 / Q5I043* / Q96RU2*ENSDARG0000000888048


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR003903  Ubiquitin interacting motif
 IPR009060  UBA-like superfamily
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:1904888 cranial skeletal system development IMP
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000109 forebrain forebrain bulbous , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001114 head head malformed , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk immature , abnormal
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 ZFA:0001117 post-vent region post-vent region necrotic , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage absent , abnormal
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 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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