ENSDARG00000012747


Danio rerio

Features
Gene ID: ENSDARG00000012747
  
Biological name :rer1
  
Synonyms : rer1 / retention in endoplasmic reticulum sorting receptor 1
  
Possible biological names infered from orthology : O15258 / Protein RER1 / Q9CQU3
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 48942470
Gene end: 48961405
  
Corresponding Affymetrix probe sets: Dr.13426.1.S1_at (Zebrafish Array)   Dr.6645.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000155364
Ensembl peptide - ENSDARP00000007832
Ensembl peptide - ENSDARP00000121288
Ensembl peptide - ENSDARP00000156459
NCBI entrez gene - 393648     See in Manteia.
RefSeq - XM_005167299
RefSeq - XM_005167296
RefSeq Peptide - NP_956969
swissprot - Q6PE45
ZFIN ID - ZDB-GENE-040426-1494
Ensembl - ENSDARG00000012747
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RER1ENSGALG00000021683Gallus gallus
 RER1ENSG00000157916Homo sapiens
 Rer1ENSMUSG00000029048Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004932  Retrieval of early ER protein Rer1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IBA
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle motile cilium decreased length , abnormal
Kupffers vesicle motile cilium movement quality , abnormal
Show

 ZFA:0000130 olfactory pit olfactory pit cilium decreased length , abnormal
Show

 ZFA:0000151 pronephros pronephros cilium decreased length , abnormal
Show

 ZFA:0000152 retina retina decreased functionality , abnormal
Show

 ZFA:0000243 neuromast neuromast decreased amount , abnormal
Show

 ZFA:0000386 macula macula cilium decreased length , abnormal
Show

 ZFA:0000940 posterior lateral line neuromast posterior lateral line neuromast hair cell decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis bent , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage morphology , abnormal
pharyngeal arch cartilage chondrocyte decreased amount , abnormal
Show

 ZFA:0001472 anterior lateral line neuromast anterior lateral line neuromast cilium decreased length , abnormal
Show

 ZFA:0009154 eye photoreceptor cell eye photoreceptor cell photoreceptor outer segment decreased size , abnormal
eye photoreceptor cell photoreceptor outer segment decreased amount , abnormal
Show

 ZFA:0009262 retinal cone cell retinal cone cell decreased amount , abnormal
Show

 ZFA:0009275 retinal rod cell retinal rod cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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