ENSMUSG00000029048


Mus musculus

Features
Gene ID: ENSMUSG00000029048
  
Biological name :Rer1
  
Synonyms : Protein RER1 / Q9CQU3 / Rer1
  
Possible biological names infered from orthology : O15258 / retention in endoplasmic reticulum sorting receptor 1
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: E2
Gene start: 155074110
Gene end: 155086382
  
Corresponding Affymetrix probe sets: 10519096 (MoGene1.0st)   1460660_x_at (Mouse Genome 430 2.0 Array)   1460706_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000030914
NCBI entrez gene - 67830     See in Manteia.
MGI - MGI:1915080
RefSeq - XM_011250328
RefSeq - NM_026395
RefSeq - XM_006539132
RefSeq - XM_006539133
RefSeq - XM_006539130
RefSeq - XM_006539131
RefSeq Peptide - NP_080671
swissprot - Q9CQU3
Ensembl - ENSMUSG00000029048
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rer1ENSDARG00000012747Danio rerio
 RER1ENSGALG00000021683Gallus gallus
 RER1ENSG00000157916Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004932  Retrieval of early ER protein Rer1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEA
 biological_processGO:0007528 neuromuscular junction development IMP
 biological_processGO:0071340 skeletal muscle acetylcholine-gated channel clustering IMP
 biological_processGO:1903078 positive regulation of protein localization to plasma membrane IMP
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005793 endoplasmic reticulum-Golgi intermediate compartment IDA
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IEA
 molecular_functionGO:0033130 acetylcholine receptor binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001053 abnormal neuromuscular synapse "malformed or absent membrane to membrane contact of a motor axon and a muscle myofiber resulting in aberrant transmission of nerve impulses" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:CLS, J:60159, J:47439]
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Allelic Composition: Cd44tm1Hbg/Cd44tm1Hbg,Tg(TNF)197Gkl/0
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * CBA

 MP:0009402 decreased skeletal muscle fiber diameter "decreased width of the cross-sectional distance that extends from one lateral edge of a skeletal muscle fiber, through its center and to the opposite lateral edge" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Cd44tm1Hbg/Cd44tm1Hbg,Tg(TNF)197Gkl/0
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * CBA

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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