ENSDARG00000012820


Danio rerio

Features
Gene ID: ENSDARG00000012820
  
Biological name :nop56
  
Synonyms : nop56 / NOP56 ribonucleoprotein homolog
  
Possible biological names infered from orthology : NOP56 ribonucleoprotein / Nucleolar protein 56 / O00567 / Q9D6Z1
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 11958758
Gene end: 11970199
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000062680
Ensembl peptide - ENSDARP00000093210
Ensembl peptide - ENSDARP00000099474
NCBI entrez gene - 394196     See in Manteia.
RefSeq - NM_201217
RefSeq Peptide - NP_957511
swissprot - G1K2N3
swissprot - E7EZW9
swissprot - Q6DRE5
ZFIN ID - ZDB-GENE-040109-1
Ensembl - ENSDARG00000012820
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOP56ENSG00000101361Homo sapiens
 Nop56ENSMUSG00000027405Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002687  Nop domain
 IPR012974  NOP5, N-terminal
 IPR012976  NOSIC


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000154 rRNA modification IBA
 biological_processGO:0007507 heart development IMP
 cellular_componentGO:0031428 box C/D snoRNP complex IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0030515 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain quality , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk quality , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased size , abnormal
trunk decreased thickness , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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