ENSMUSG00000027405


Mus musculus

Features
Gene ID: ENSMUSG00000027405
  
Biological name :Nop56
  
Synonyms : Nop56 / Nucleolar protein 56 / Q9D6Z1
  
Possible biological names infered from orthology : NOP56 ribonucleoprotein / O00567
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: F1
Gene start: 130274430
Gene end: 130279313
  
Corresponding Affymetrix probe sets: 10476093 (MoGene1.0st)   10476102 (MoGene1.0st)   10476104 (MoGene1.0st)   10476106 (MoGene1.0st)   1426533_at (Mouse Genome 430 2.0 Array)   1455035_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000124616
Ensembl peptide - ENSMUSP00000125305
Ensembl peptide - ENSMUSP00000125304
Ensembl peptide - ENSMUSP00000028890
Ensembl peptide - ENSMUSP00000099487
Ensembl peptide - ENSMUSP00000123879
Ensembl peptide - ENSMUSP00000123890
Ensembl peptide - ENSMUSP00000124080
Ensembl peptide - ENSMUSP00000124228
NCBI entrez gene - 67134     See in Manteia.
MGI - MGI:1914384
RefSeq - NM_024193
RefSeq - XM_006500062
RefSeq Peptide - NP_077155
swissprot - F6USW7
swissprot - F6V095
swissprot - E0CXZ0
swissprot - F7CHQ7
swissprot - Q9D6Z1
swissprot - F7CHP9
swissprot - A2APD7
swissprot - F6TLG3
swissprot - F6U250
Ensembl - ENSMUSG00000027405
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nop56ENSDARG00000012820Danio rerio
 NOP56ENSG00000101361Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002687  Nop domain
 IPR012974  NOP5, N-terminal
 IPR012976  NOSIC
 IPR036070  Nop domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000154 rRNA modification IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031428 box C/D snoRNP complex IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0070761 pre-snoRNP complex IEA
 molecular_functionGO:0030515 snoRNA binding IEA
 molecular_functionGO:0045296 cadherin binding IEA
 molecular_functionGO:1990226 histone methyltransferase binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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