ENSDARG00000012866


Danio rerio

Features
Gene ID: ENSDARG00000012866
  
Biological name :picalma
  
Synonyms : phosphatidylinositol binding clathrin assembly protein a / picalma
  
Possible biological names infered from orthology : phosphatidylinositol binding clathrin assembly protein / PICALM / Q13492 / Q7M6Y3
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 29137482
Gene end: 29225165
  
Corresponding Affymetrix probe sets: Dr.5226.1.S1_at (Zebrafish Array)   NM_200927_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124208
Ensembl peptide - ENSDARP00000144639
Ensembl peptide - ENSDARP00000125039
Ensembl peptide - ENSDARP00000021165
Ensembl peptide - ENSDARP00000032600
Ensembl peptide - ENSDARP00000111719
NCBI entrez gene - 393901     See in Manteia.
RefSeq - NM_200927
RefSeq - XM_009305389
RefSeq Peptide - NP_957221
swissprot - F6NPI4
swissprot - F8W4F2
swissprot - F8W5M9
swissprot - E7F295
swissprot - A8WGP5
swissprot - F1QKW9
ZFIN ID - ZDB-GENE-040426-761
Ensembl - ENSDARG00000012866
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PICALMENSGALG00000039037Gallus gallus
 PICALMENSG00000073921Homo sapiens
 PicalmENSMUSG00000039361Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
picalmb / phosphatidylinositol binding clathrin assembly protein b / PICALM* / Q7M6Y3* / Q13492* / phosphatidylinositol binding clathrin assembly protein*ENSDARG0000001413783
si:ch211-200p22.4ENSDARG0000002917066
snap91 / synaptosomal-associated protein 91 / O60641* / synaptosome associated protein 91*ENSDARG0000009880949
si:ch211-214j24.9 / SNAP91 (1 of many) / SNAP91* / O60641* / synaptosome associated protein 91* / synaptosomal-associated protein 91*ENSDARG0000001593144
si:ch211-200p22.4ENSDARG0000011026641


Protein motifs (from Interpro)
Interpro ID Name
 IPR008942  ENTH/VHS
 IPR011417  AP180 N-terminal homology (ANTH) domain
 IPR013809  ENTH domain
 IPR014712  Phosphoinositide-binding clathrin adaptor, domain 2
 IPR030412  Phosphatidylinositol-binding clathrin assembly protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0048268 clathrin coat assembly IEA
 cellular_componentGO:0030136 clathrin-coated vesicle IEA
 molecular_functionGO:0005543 phospholipid binding IEA
 molecular_functionGO:0005545 1-phosphatidylinositol binding IEA
 molecular_functionGO:0030276 clathrin binding IEA


Pathways (from Reactome)
Pathway description
Golgi Associated Vesicle Biogenesis
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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