ENSDARG00000013207


Danio rerio

Features
Gene ID: ENSDARG00000013207
  
Biological name :zeb1b
  
Synonyms : zeb1b / zinc finger E-box binding homeobox 1b
  
Possible biological names infered from orthology : P37275 / Q64318 / ZEB1 / zinc finger E-box binding homeobox 1
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 26750274
Gene end: 26851726
  
Corresponding Affymetrix probe sets: Dr.10709.1.S1_at (Zebrafish Array)   NM_131709_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000047723
NCBI entrez gene - 114425     See in Manteia.
RefSeq - NM_131709
RefSeq Peptide - NP_571784
swissprot - F1QPM7
ZFIN ID - ZDB-GENE-010621-1
Ensembl - ENSDARG00000013207
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZEB1ENSGALG00000007260Gallus gallus
 ZEB1ENSG00000148516Homo sapiens
 Zeb1ENSMUSG00000024238Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zeb1a / zinc finger E-box binding homeobox 1a / ZEB1* / Q64318* / P37275* / zinc finger E-box binding homeobox 1*ENSDARG0000001678843
zeb2b / zinc finger E-box binding homeobox 2b / ZEB2* / O60315* / zinc finger E-box binding homeobox 2*ENSDARG0000007841640
zeb2a / zinc finger E-box binding homeobox 2aENSDARG0000006233837
BX470259.3 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001115068
CR388132.2 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001040418
BX005085.1 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000000899477
znf1124 / zinc finger protein 1124 / O75467* / Q6AW86* / ZNF324* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000000697967
zgc:173575 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001154567
zgc:173575 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001168156


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR008598  Drought induced 19 protein type, zinc-binding domain
 IPR009057  Homeobox-like domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007369 gastrulation IMP
 biological_processGO:0010470 regulation of gastrulation IGI
 biological_processGO:0070587 regulation of cell-cell adhesion involved in gastrulation IGI
 biological_processGO:2000145 regulation of cell motility IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism morphology , abnormal
whole organism anterior-posterior axis shortened , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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